
The Ministry of Transportation has a complete and coordinated organizational structure. The organization and work procedures of the Ministry of Transportation are based on simple bureaucratic principles, but have effective, efficient and optimal performance in carrying out their duties.
Since 2021, there have been several types of nomenclature of organizational units for the Ministry of Transportation, namely Secretariat General, Directorate General, Agency, Inspectorate General, Expert Staff, and Center. Each organizational unit has a position, duties and functions, and is responsible to the Minister of Transportation.

The Supreme Court of the Republic of Indonesia (Indonesian: Mahkamah Agung Republik Indonesia) is the independent judicial arm of the state. It maintains a system of courts and sits above the other courts and is the final court of appeal. It can also re-examine cases if new evidence emerges.
The Supreme Court is independent as of the third amendment to the Constitution of Indonesia. The Supreme Court has oversight over the high courts (Pengadilan Tinggi) and district courts (Pengadilan Negeri). There are about 68 high courts: 31 General Courts, 29 Religious Courts, 4 Administrative Courts and 4 Military Courts. There are around 250 district courts with additional district courts being created from time to time. The Supreme Court is the final court of appeal (kasasi) following appeals from the district courts to the high courts. The Supreme Court can also re-examine cases if sufficient new evidence is found.

The Attorney General's Office of the Republic of Indonesia is a state institution that exercises state power, particularly in the field of prosecution. As an agency authorized to uphold law and justice, the Attorney General's Office is led by the Attorney General who is elected by and is responsible to the President. The Attorney General's Office, High Attorney's Office, and District Attorney are the powers of the state, especially in the field of prosecution, where all of them form a unified whole that cannot be separated.